dr_sasa help

Upload a PDB, ENT or Mol2 structure up to 30 MB and choose a calculation mode. Your results page includes the output files, available contact plots and a ZIP download.

Mode 0 — SASA
Solvent accessible surface areas.
Mode 1 — Intermolecular CSA
Buried surface areas between molecular objects, grouped automatically by molecular type.
Mode 2 — Residue contacts
Intramolecular buried surface areas between residues.
Mode 3 — Atom contacts
Intramolecular buried surface areas between atoms.
Mode 4 — Contact surface area
Contact surfaces between molecular objects without requiring solvent accessibility.

Some structures and modes do not produce contact plots. When plotting is unavailable, the original surface data remains downloadable. Calculations have a 20 minute limit, with up to 10 additional minutes for plots and packaging.

Keep your results link: anyone with the link can access the uploaded structure and results.

How to cite

J. Ribeiro, C. Ríos-Vera, F. Melo, and A. Schüller (2019), Calculation of accurate interatomic contact surface areas for the quantitative analysis of non-bonded molecular interactions. Bioinformatics, 35 (18), 3499-3501. https://doi.org/10.1093/bioinformatics/btz062.
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